3D structure

PDB id
5D8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGUAACAG
Length
8 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84085.3
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
17

Unit IDs

5D8H|1|A|C|1202
5D8H|1|A|G|1203
5D8H|1|A|U|1204
5D8H|1|A|A|1205
5D8H|1|A|A|1206
5D8H|1|A|C|1207
5D8H|1|A|A|1208
5D8H|1|A|G|1209

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L11
Chain D
THIOSTREPTON

Coloring options:

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