HL_5D8H_002
3D structure
- PDB id
- 5D8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUAACAG
- Length
- 8 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84085.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
5D8H|1|A|C|1202
5D8H|1|A|G|1203
5D8H|1|A|U|1204
5D8H|1|A|A|1205
5D8H|1|A|A|1206
5D8H|1|A|C|1207
5D8H|1|A|A|1208
5D8H|1|A|G|1209
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L11
- Chain D
- THIOSTREPTON
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