HL_1KQS_034

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_034 not in the Motif Atlas

Homologous match to HL_4V9F_034

Geometric discrepancy: 0.032

The information below is about HL_4V9F_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

1KQS|1|0|G|1387
1KQS|1|0|U|1388
1KQS|1|0|G|1389
1KQS|1|0|A|1390
1KQS|1|0|G|1391
1KQS|1|0|A|1392
1KQS|1|0|A|1393
1KQS|1|0|C|1394
1KQS|1|0|C|1395

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

RIBOSOMAL PROTEIN L19E

Chain Q

RIBOSOMAL PROTEIN L22