HL_1KQS_042

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1KQS|1|0|A|1689, 1KQS|1|0|A|1691, 1KQS|1|0|A|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_042 not in the Motif Atlas

Homologous match to HL_4V9F_042

Geometric discrepancy: 0.0405

The information below is about HL_4V9F_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1KQS|1|0|C|1687
1KQS|1|0|G|1688
1KQS|1|0|A|1689
1KQS|1|0|C|1690
1KQS|1|0|A|1691
1KQS|1|0|C|1692
1KQS|1|0|A|1693
1KQS|1|0|G|1694

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L39E

Chain Q

RIBOSOMAL PROTEIN L22

Chain Z

RIBOSOMAL PROTEIN L37E