HL_1KQS_043

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGCGAAAG

Length

9 nucleotides

Bulged bases

1KQS|1|0|A|1710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_043 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.0403

The information below is about HL_4V9F_043

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

1KQS|1|0|C|1705
1KQS|1|0|G|1706
1KQS|1|0|G|1707
1KQS|1|0|C|1708
1KQS|1|0|G|1709
1KQS|1|0|A|1710
1KQS|1|0|A|1711
1KQS|1|0|A|1712
1KQS|1|0|G|1713

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

RIBOSOMAL PROTEIN L19E