HL_1KQS_064

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_064 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3995

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

1KQS|1|0|G|2585
1KQS|1|0|U|2586
1KQS|1|0|U|2587
1KQS|1|0|G|2588
1KQS|1|0|U|2589
1KQS|1|0|U|2590
1KQS|1|0|C|2591
1KQS|1|0|G|2592
1KQS|1|0|C|2593

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 4

CC-Pmn-pcb

Chain B

RIBOSOMAL PROTEIN L3

Chain J

RIBOSOMAL PROTEIN L14