HL_1KQS_068

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1KQS|1|0|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0308

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

1KQS|1|0|C|2780
1KQS|1|0|U|2781
1KQS|1|0|G|2782
1KQS|1|0|A|2783
1KQS|1|0|A|2784
1KQS|1|0|C|2785
1KQS|1|0|G|2786
1KQS|1|0|C|2787
1KQS|1|0|A|2788
1KQS|1|0|U|2789
1KQS|1|0|C|2790
1KQS|1|0|U|2791
1KQS|1|0|A|2792
1KQS|1|0|A|2793
1KQS|1|0|G|2794

Current chains

Chain 0

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L6

Chain I

RIBOSOMAL PROTEIN L13