HL_1LVJ_006

3D structure

PDB id

1LVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCUGGGAG

Length

8 nucleotides

Bulged bases

1LVJ|6|A|U|31, 1LVJ|6|A|G|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1LVJ_006 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1336

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

1LVJ|6|A|C|29
1LVJ|6|A|C|30
1LVJ|6|A|U|31
1LVJ|6|A|G|32
1LVJ|6|A|G|33
1LVJ|6|A|G|34
1LVJ|6|A|A|35
1LVJ|6|A|G|36

Current chains

Chain A

HIV-1 Trans Activating Region RNA

Nearby chains