HL_1M1K_012

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGACAACC

Length

9 nucleotides

Bulged bases

1M1K|1|A|G|336, 1M1K|1|A|A|337, 1M1K|1|A|C|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M1K_012 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.0411

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

1M1K|1|A|G|334
1M1K|1|A|U|335
1M1K|1|A|G|336
1M1K|1|A|A|337
1M1K|1|A|C|338
1M1K|1|A|A|339
1M1K|1|A|A|340
1M1K|1|A|C|341
1M1K|1|A|C|342

Current chains

Chain A

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L4

Chain U

RIBOSOMAL PROTEIN L24

Chain Z

RIBOSOMAL PROTEIN L32E