HL_1M1K_038

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAUCGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M1K_038 not in the Motif Atlas

Homologous match to HL_4V9F_038

Geometric discrepancy: 0.1239

The information below is about HL_4V9F_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

17

Unit IDs

1M1K|1|A|G|1557
1M1K|1|A|C|1558
1M1K|1|A|A|1559
1M1K|1|A|U|1561
1M1K|1|A|C|1562
1M1K|1|A|G|1563
1M1K|1|A|C|1564

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E