Motif HL_84085.3 Version HL_84085.3 of this group appears in releases 3.87 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4V9F_043 | 4V9F | 0.3959 | 1 | 0 | LSU rRNA | C | 1705 | G | 1706 | G | 1707 | C | 1708 | G | 1709 | A | 1711 | A | 1712 | G | 1713 | cWW | tSH | tSH | ||
2 | HL_5J7L_012 | 5J7L | 0.4101 | 1 | AA | SSU rRNA | G | 462 | U | 463 | U | 464 | A | 465 | A | 466 | A | 468 | C | 469 | C | 470 | cWW | ncWW | |||
3 | HL_4KQY_003 | 4KQY | 0.3723 | 1 | A | SAM-I riboswitch | C | 94 | U | 95 | C | 96 | G | 97 | A | 98 | A | 99 | C | 100 | G | 102 | cWW | ||||
4 | HL_1E8O_001 | 1E8O | 0.2889 | 0 | E | 7SL RNA | G | 110 | G | 111 | U | 112 | G | 113 | G | 114 | C | 115 | G | 116 | C | 117 | cWW | ntSH | ntSH | ||
5 | HL_5AOX_001 | 5AOX | 0.2584 | 0 | C | ALU JO CONSENSUS RNA | G | 11 | G | 12 | U | 13 | G | 14 | G | 15 | C | 16 | U | 17 | C | 18 | cWW | ntSH | ntSH | ||
6 | HL_4WF9_004 | 4WF9 | 0.2873 | 0 | X | LSU rRNA | A | 136 | G | 137 | U | 138 | U | 139 | A | 140 | U | 141 | G | 142 | U | 143 | cWW | ntSH | |||
7 | HL_8C3A_028 | 8C3A | 0.1697 | 0 | 1 | LSU rRNA | U | 1263 | G | 1264 | U | 1265 | A | 1266 | A | 1267 | C | 1268 | A | 1269 | A | 1270 | cWW | tSH | |||
8 | HL_6PRV_002 | 6PRV | 0.1693 | 0 | A | LSU rRNA | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | U | 1097 | A | 1098 | G | 1099 | cWW | tSH | |||
9 | HL_1MMS_002 | 1MMS | 0.1661 | 0 | C | 23S RIBOSOMAL RNA | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | C | 1097 | A | 1098 | G | 1099 | cWW | tSH | ntSH | ||
10 | HL_5D8H_002 | 5D8H | 0.1609 | 0 | A | LSU rRNA | C | 1202 | G | 1203 | U | 1204 | A | 1205 | A | 1206 | C | 1207 | A | 1208 | G | 1209 | cWW | tSH | ntSH | ||
11 | HL_5J7L_154 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 712 | G | 713 | U | 714 | A | 715 | A | 716 | C | 717 | A | 718 | C | 719 | cWW | tSH | ntSH | ||
12 | HL_4V9F_049 | 4V9F | 0.2308 | 0 | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | A | 1919 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | tSH | tSH | ||
13 | HL_3HHN_010 | 3HHN | 0.2474 | 0 | E | Class I ligase ribozyme, self-ligation product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | tSH | ntSH | ||
14 | HL_8VTW_021 | 8VTW | 0.2701 | 0 | 1A | LSU rRNA | G | 712 | G | 713 | U | 714 | G | 715 | A | 716 | G | 717 | A | 718 | C | 719 | cWW | tSH | |||
15 | HL_5TBW_037 | 5TBW | 0.7759 | 1 | 1 | LSU rRNA | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW | ncWW | |||
16 | HL_8C3A_037 | 8C3A | 0.7734 | 1 | 1 | LSU rRNA | G | 1676 | U | 1677 | U | 1678 | A | 1679 | U | 1680 | C | 1681 | U | 1682 | U | 1684 | cWW | ncSW | ncWW | ||
17 | HL_4V9F_038 | 4V9F | 0.8076 | 0 | 0 | LSU rRNA | G | 1557 | C | 1558 | A | 1559 | U | 1560 | U | 1561 | C | 1562 | G | 1563 | C | 1564 | cWW | ncSW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGUAACAG | 2 |
GUUAUCUUU | 2 |
CGGCGAAAG | 1 |
GUUAAUACC | 1 |
CUCGAACAG | 1 |
GGUGGCGC | 1 |
GGUGGCUC | 1 |
AGUUAUGU | 1 |
UGUAACAA | 1 |
CGUAAUAG | 1 |
GGUAACAC | 1 |
CGUACAAG | 1 |
GUUAAAAC | 1 |
GGUGAGAC | 1 |
GCAUUCGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUAACA | 4 |
UUAUCUU | 2 |
GGCGAAA | 1 |
UUAAUAC | 1 |
UCGAACA | 1 |
GUGGCG | 1 |
GUGGCU | 1 |
GUUAUG | 1 |
GUAAUA | 1 |
GUACAA | 1 |
UUAAAA | 1 |
GUGAGA | 1 |
CAUUCG | 1 |
Release history
Release | 3.87 |
---|---|
Date | 2024-08-14 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.46 | Max 0.96
Coloring options: