#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 81-82-62-73-6
1 HL_4V9F_0434V9F0.39591 0 LSU rRNAC1705G1706G1707C1708G1709A1711A1712G1713cWWtSHtSH
2 HL_5J7L_0125J7L0.41011 AA SSU rRNAG462U463U464A465A466A468C469C470cWWncWW
3 HL_4KQY_0034KQY0.37231 A SAM-I riboswitchC94U95C96G97A98A99C100G102cWW
4 HL_1E8O_0011E8O0.28890 E7SL RNAG110G111U112G113G114C115G116C117cWWntSHntSH
5 HL_5AOX_0015AOX0.25840 CALU JO CONSENSUS RNAG11G12U13G14G15C16U17C18cWWntSHntSH
6 HL_4WF9_0044WF90.28730 X LSU rRNAA136G137U138U139A140U141G142U143cWWntSH
7 HL_8C3A_0288C3A0.16970 1 LSU rRNAU1263G1264U1265A1266A1267C1268A1269A1270cWWtSH
8 HL_6PRV_0026PRV0.16930 A LSU rRNAC1092G1093U1094A1095A1096U1097A1098G1099cWWtSH
9 HL_1MMS_0021MMS0.16610 C23S RIBOSOMAL RNAC1092G1093U1094A1095A1096C1097A1098G1099cWWtSHntSH
10 HL_5D8H_0025D8H0.16090 A LSU rRNAC1202G1203U1204A1205A1206C1207A1208G1209cWWtSHntSH
11 HL_5J7L_1545J7L0.00000 DA LSU rRNAG712G713U714A715A716C717A718C719cWWtSHntSH
12 HL_4V9F_0494V9F0.23080 0 LSU rRNAC1916G1917U1918A1919C1920A1921A1922G1923cWWtSHtSH
13 HL_3HHN_0103HHN0.24740 EClass I ligase ribozyme, self-ligation productG92U93U94A95A96A97A98C99cWWtSHntSH
14 HL_8VTW_0218VTW0.27010 1A LSU rRNAG712G713U714G715A716G717A718C719cWWtSH
15 HL_5TBW_0375TBW0.77591 1 LSU rRNAG1680U1681U1682A1683U1684C1685U1686U1688cWWncWW
16 HL_8C3A_0378C3A0.77341 1 LSU rRNAG1676U1677U1678A1679U1680C1681U1682U1684cWWncSWncWW
17 HL_4V9F_0384V9F0.80760 0 LSU rRNAG1557C1558A1559U1560U1561C1562G1563C1564cWWncSW

3D structures

Complete motif including flanking bases
SequenceCounts
CGUAACAG2
GUUAUCUUU2
CGGCGAAAG1
GUUAAUACC1
CUCGAACAG1
GGUGGCGC1
GGUGGCUC1
AGUUAUGU1
UGUAACAA1
CGUAAUAG1
GGUAACAC1
CGUACAAG1
GUUAAAAC1
GGUGAGAC1
GCAUUCGC1
Non-Watson-Crick part of the motif
SequenceCounts
GUAACA4
UUAUCUU2
GGCGAAA1
UUAAUAC1
UCGAACA1
GUGGCG1
GUGGCU1
GUUAUG1
GUAAUA1
GUACAA1
UUAAAA1
GUGAGA1
CAUUCG1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
Basepair signature
cWW-tSH-F-F-F-F
Heat map statistics
Min 0.08 | Avg 0.46 | Max 0.96
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