HL_1M1K_055

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1M1K|1|A|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M1K_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.038

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1M1K|1|A|C|2281
1M1K|1|A|U|2282
1M1K|1|A|G|2283
1M1K|1|A|G|2284
1M1K|1|A|G|2285
1M1K|1|A|G|2286
1M1K|1|A|C|2287
1M1K|1|A|G|2288
1M1K|1|A|G|2289

Current chains

Chain A

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L10E