3D structure

PDB id
1M5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a hairpin ribozyme in the catalytically-active conformation
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CAUUGCACUCCG
Length
12 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_31581.5
Basepair signature
cWW-F-F-F-cSH-F-F-F-F
Number of instances in this motif group
3

Unit IDs

1M5K|1|B|C|35
1M5K|1|B|A|36
1M5K|1|B|U|37
1M5K|1|B|U|38
1M5K|1|B|G|39
1M5K|1|B|C|40
1M5K|1|B|A|41
1M5K|1|B|C|42
1M5K|1|B|U|43
1M5K|1|B|C|44
1M5K|1|B|C|45
1M5K|1|B|G|46

Current chains

Chain B
RNA HAIRPIN RIBOZYME

Nearby chains

Chain C
PROTEIN (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A)

Coloring options:

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