1M5K Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1M5K_002 | 1/B/35:46 | U1 small nuclear ribonucleoprotein A binding hairpin HL_33074.4 | ||
| HL_1M5K_003 | 1/B/74:79 | GNRA HL_37824.7 | ||
| HL_1M5K_005 | 1/E/35:46 | U1 small nuclear ribonucleoprotein A binding hairpin | geometric HL_1M5K_002 HL_33074.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1M5K_006 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1M5K_001 | 1/A/11:16, 1/B/6:11 | No text annotation IL_80926.1 | ||
| IL_1M5K_003 | 1/B/19:27, 1/B/54:64 | No text annotation IL_60797.1 | ||
| IL_1M5K_005 | 1/D/11:16, 1/E/6:11 | No text annotation | geometric IL_1M5K_001 IL_80926.1 | |
| IL_1M5K_007 | 1/E/19:27, 1/E/54:64 | No text annotation | geometric IL_1M5K_003 IL_60797.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1M5K_002 | Isolated cWH basepair | ||
| IL_1M5K_004 | Isolated cWH basepair | ||
| IL_1M5K_006 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_1M5K_001 | 1/A/7:8, 1/B/14:15, 1/B/68:69, 1/B/84:85 | No text annotation J4_00691.2 | ||
| J4_1M5K_003 | 1/D/7:8, 1/E/14:15, 1/E/68:69, 1/E/84:85 | No text annotation | ||
| J4_1M5K_002 | 1/D/7:9, 1/E/13:15, 1/E/68:69, 1/E/84:85 | No text annotation |
Problematic loops
No problematic loops
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