HL_1M5K_006

3D structure

PDB id

1M5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a hairpin ribozyme in the catalytically-active conformation

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M5K_006 not in the Motif Atlas

Geometric match to HL_7RQB_071

Geometric discrepancy: 0.2774

The information below is about HL_7RQB_071

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

1M5K|1|E|G|74
1M5K|1|E|G|75
1M5K|1|E|A|76
1M5K|1|E|A|77
1M5K|1|E|A|78
1M5K|1|E|C|79

Current chains

Chain E

RNA HAIRPIN RIBOZYME

Nearby chains