HL_1M5L_004

3D structure

PDB id

1M5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of wild-type and mutant internal loops from the SL-1 domain of the HIV-1 packaging signal

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

1M5L|4|A|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M5L_004 not in the Motif Atlas

Geometric match to HL_1I6U_001

Geometric discrepancy: 0.1553

The information below is about HL_1I6U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

1M5L|4|A|C|17
1M5L|4|A|U|18
1M5L|4|A|U|19
1M5L|4|A|C|20
1M5L|4|A|G|21
1M5L|4|A|G|22

Current chains

Chain A

modified HIV-1 packaging signal stem-loop 1 RNA

Nearby chains