HL_1M90_016

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UCAGAAG

Length

7 nucleotides

Bulged bases

1M90|1|A|A|497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M90_016 not in the Motif Atlas

Homologous match to HL_4V9F_016

Geometric discrepancy: 0.0323

The information below is about HL_4V9F_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

1M90|1|A|U|493
1M90|1|A|C|494
1M90|1|A|A|495
1M90|1|A|G|496
1M90|1|A|A|497
1M90|1|A|A|498
1M90|1|A|G|499

Current chains

Chain A

23S RRNA

Nearby chains

Chain S

RIBOSOMAL PROTEIN L22