HL_1M90_030

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1M90|1|A|A|1174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M90_030 not in the Motif Atlas

Homologous match to HL_4V9F_030

Geometric discrepancy: 0.2255

The information below is about HL_4V9F_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92304.1

Basepair signature

cWW-cSW-R-R-tSH-R-R

Number of instances in this motif group

5

Unit IDs

1M90|1|A|C|1168
1M90|1|A|U|1169
1M90|1|A|U|1170
1M90|1|A|A|1171
1M90|1|A|G|1172
1M90|1|A|A|1173
1M90|1|A|A|1174
1M90|1|A|G|1175
1M90|1|A|C|1176
1M90|1|A|A|1177
1M90|1|A|G|1178

Current chains

Chain A

23S RRNA

Nearby chains