HL_1MJI_002

3D structure

PDB id

1MJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83767.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

1MJI|1|D|C|38
1MJI|1|D|A|39
1MJI|1|D|U|40
1MJI|1|D|G|41
1MJI|1|D|C|42
1MJI|1|D|C|43
1MJI|1|D|G|44

Current chains

Chain D

5S rRNA fragment

Nearby chains

Chain A

50S ribosomal protein L5

Chain B

50S ribosomal protein L5

Chain C

5S rRNA fragment