Motif HL_59381.2 Version HL_59381.2 of this group appears in releases 4.1 to 4.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6	1-6	2-5
1	HL_7A0S_069	7A0S	0.3546	1	Y	5S rRNA	C	40	A	41	U	42	C	44	C	45	G	46	cWW
2	HL_4WF9_066	4WF9	0.2607	1	Y	5S rRNA	C	36	A	37	U	38	C	40	C	41	G	42	cWW
3	HL_4V9F_071	4V9F	0.0990	1	9	5S rRNA	C	37	A	38	U	39	C	41	C	42	G	43	cWW
4	HL_8B0X_097	8B0X	0.0808	1	b	5S rRNA	C	38	A	39	U	40	C	42	C	43	G	44	cWW
5	HL_9DFE_068	9DFE	0.0920	1	1B	5S rRNA	C	38	A	39	U	40	C	42	C	43	G	44	cWW
6	HL_1MJI_002	1MJI	0.0000	1	D	5S rRNA fragment	C	38	A	39	U	40	C	42	C	43	G	44	cWW
7	HL_9E6Q_069	9E6Q	0.1258	0	2	5S rRNA	C	42	A	43	U	44	C	45	A	46	G	47	cWW
8	HL_8OI5_069	8OI5	0.1999	0	3	5S rRNA	C	36	G	37	U	38	U	39	C	40	G	41	cWW
9	HL_9AXU_069	9AXU	0.2071	0	3	5S rRNA	C	36	G	37	U	38	C	39	C	40	G	41	cWW
10	HL_8QYX_072	8QYX	0.1910	0	B2	5S rRNA	C	36	G	37	U	38	C	39	U	40	G	41	cWW
11	HL_8P9A_184	8P9A	0.2380	0	AS	5S rRNA	C	36	G	37	U	38	C	39	C	40	G	41	cWW
12	HL_6AAY_001	6AAY	0.8144	2	B	RNA (52-MER)	C	37	A	38	U	39	U	40	U	41	G	44	cWW
13	HL_7A0S_019	7A0S	0.9225	0	X	LSU rRNA	U	622	G	623	A	624	A	625	A	626	A	627	cWW	ntsS

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUGCCG	4
CGUCCG	2
CAUCCCG	1
CAUUCCG	1
CAUCAG	1
CGUUCG	1
CGUCUG	1
CAUUUUGG	1
UGAAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUGCC	4
GUCC	2
AUCCC	1
AUUCC	1
AUCA	1
GUUC	1
GUCU	1
AUUUUG	1
GAAA	1

Release history

Release	4.1	4.2	4.3	4.4	4.5	4.6
Date	2025-09-10	2025-10-08	2025-11-05	2025-12-03	2025-12-31	2026-01-28
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (13)
Basepair signature: cWW-F-F-F-F
Heat map statistics: Min 0.06 | Avg 0.39 | Max 0.97

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Coloring options: Nucleotide numbers

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