HL_1N33_024

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N33_024 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.0934

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

1N33|1|A|C|1076
1N33|1|A|G|1077
1N33|1|A|U|1078
1N33|1|A|G|1079
1N33|1|A|A|1080
1N33|1|A|G|1081

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain E

30S RIBOSOMAL PROTEIN S5