HL_1N33_033
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GGGAAACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1N33_033 not in the Motif Atlas
- Homologous match to HL_6CZR_215
- Geometric discrepancy: 0.2499
- The information below is about HL_6CZR_215
- Detailed Annotation
- GNRA with near cWW
- Broad Annotation
- GNRA with near cWW
- Motif group
- HL_82182.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
1N33|1|A|G|157
1N33|1|A|G|158
1N33|1|A|G|159
1N33|1|A|A|160
1N33|1|A|A|161
1N33|1|A|A|162
1N33|1|A|C|163
1N33|1|A|U|164
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: