HL_1N33_034

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

1N33|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N33_034 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3171

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

1N33|1|A|C|418
1N33|1|A|C|419
1N33|1|A|U|420
1N33|1|A|U|421
1N33|1|A|C|422
1N33|1|A|G|423
1N33|1|A|G|424
1N33|1|A|G|425

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain D

30S RIBOSOMAL PROTEIN S4