HL_1N36_008

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N36_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1339

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1N36|1|A|C|320
1N36|1|A|A|321
1N36|1|A|C|322
1N36|1|A|U|323
1N36|1|A|G|324
1N36|1|A|A|325
1N36|1|A|G|326
1N36|1|A|A|327
1N36|1|A|C|328
1N36|1|A|A|329
1N36|1|A|C|330
1N36|1|A|G|331
1N36|1|A|G|332
1N36|1|A|G|333

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20