RNA 3D Hub //

1N36 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_1N36_0011/A/12:22No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_1N36_0021/A/79:90tRNA anticodon loop
geometric
HL_4WT8_216
HL_06059.6
HL_1N36_0031/A/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_1N36_0391/A/190B:190GNo text annotation
homologous
HL_6CZR_075
NA
HL_1N36_0051/A/201:216Mini UNCG
homologous
HL_4LFB_005
HL_48778.2
HL_1N36_0061/A/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_1N36_0071/A/296:301GNRA
homologous
HL_4LFB_007
HL_37824.7
HL_1N36_0081/A/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_1N36_0091/A/341:348No text annotation
geometric
HL_7MLW_004
NA
HL_1N36_0341/A/378:385GNRA with near cWW
geometric
HL_2IL9_007
NA
HL_1N36_0401/A/409:433No text annotation
HL_1N36_0111/A/416:427No text annotation
HL_1N36_0121/A/458:474GNRA
homologous
HL_4LFB_012
HL_37824.7
HL_1N36_0131/A/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_1N36_0361/A/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_1N36_0151/A/689:698No text annotation
homologous
HL_5J7L_015
HL_75293.5
HL_1N36_0161/A/726:731GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_1N36_0171/A/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_1N36_0411/A/838:848Mini UNCG
homologous
HL_6CZR_089
NA
HL_1N36_0191/A/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_1N36_0201/A/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_1N36_0211/A/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_1N36_0221/A/1012:1017GNRA
geometric
HL_4LFB_022
HL_37824.7
HL_1N36_0241/A/1076:1081GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_1N36_0251/A/1089:1096T-loop related
homologous
HL_5J7L_024
HL_77436.5
HL_1N36_0261/A/1134:1140No text annotation
geometric
HL_4V9F_005
HL_87954.2
HL_1N36_0271/A/1164:1172GNRA with extra cWW
geometric
HL_7A0S_056
HL_04259.3
HL_1N36_0291/A/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_1N36_0311/A/1449:1454UNCG
homologous
HL_4LFB_031
HL_34617.5
HL_1N36_0321/A/1515:1520GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_1N36_004No text annotation
HL_1N36_033No text annotation
HL_1N36_010No text annotation
HL_1N36_035No text annotation
HL_1N36_014No text annotation
HL_1N36_018No text annotation
HL_1N36_023No text annotation
HL_1N36_037No text annotation
HL_1N36_028GNRA
HL_1N36_030No text annotation
HL_1N36_038No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_1N36_0831/A/30:32,
1/A/552:553		Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_1N36_0021/A/44:45,
1/A/396:398		Single bulged A
homologous
IL_4LFB_002
IL_31462.6
IL_1N36_0031/A/47:52,
1/A/359:361		No text annotation
homologous
IL_4LFB_003
IL_14177.2
IL_1N36_0041/A/63:66,
1/A/103:104		Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.4
IL_1N36_0051/A/67:69,
1/A/99:102		Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_87907.2
IL_1N36_0071/A/129:131,
1/A/231:232		Minor groove platform
homologous
IL_4LFB_007
IL_33761.2
IL_1N36_0081/A/132:136,
1/A/227:230		No text annotation
geometric
IL_4LFB_008
IL_64231.5
IL_1N36_0841/A/148:153,
1/A/168:174		tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_1N36_0111/A/186:188,
1/A/190K:191		Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_1N36_0121/A/242:247,
1/A/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_1N36_0851/A/249:252,
1/A/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_1N36_0151/A/292:294,
1/A/303:308		No text annotation
IL_1N36_0161/A/371:375,
1/A/389:390		C-loop
homologous
IL_4LFB_015
IL_03109.3
IL_1N36_0701/A/375:378,
1/A/385:389		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_85033.2
IL_1N36_0171/A/409:416,
1/A/427:433		No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_1N36_0861/A/446:455,
1/A/477:488		No text annotation
IL_1N36_0181/A/504:511,
1/A/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_1N36_0191/A/515:521,
1/A/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_1N36_0201/A/569:575,
1/A/880:881		No text annotation
geometric
IL_5J7L_026
IL_38186.6
IL_1N36_0211/A/580:584,
1/A/757:761		tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.7
IL_1N36_0231/A/594:596,
1/A/644:645		Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_1N36_0241/A/597:598,
1/A/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_1N36_0261/A/605:612,
1/A/628:633		No text annotation
homologous
IL_4LFB_026
IL_78349.3
IL_1N36_0271/A/654:655,
1/A/751:754		Major groove platform; stack outside cWW
homologous
IL_5J7L_031
IL_50694.7
IL_1N36_0281/A/656:658,
1/A/747:750		No text annotation
geometric
IL_6CZR_136
NA
IL_1N36_0291/A/662:666,
1/A/740:743		Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_1N36_0741/A/673:678,
1/A/712:717		No text annotation
homologous
IL_5J7L_034
NA
IL_1N36_0311/A/683:688,
1/A/699:707		Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_1N36_0321/A/774:778,
1/A/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_1N36_0331/A/779:783,
1/A/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_1N36_0341/A/887:894,
1/A/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_1N36_0871/A/922:923,
1/A/1393:1395		Single bulged A
homologous
IL_5J7L_039
IL_31462.6
IL_1N36_0361/A/925:927,
1/A/1390:1391		Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_1N36_0371/A/933:935,
1/A/1380:1384		Minor groove platform
homologous
IL_4LFB_037
IL_47078.3
IL_1N36_0881/A/953:954,
1/A/1226:1228		Minor groove platform
homologous
IL_5J7L_042
IL_51454.3
IL_1N36_0411/A/1052:1056,
1/A/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_1N36_0421/A/1057:1058,
1/A/1199:1203		Minor groove platform
geometric
IL_5J7L_048
IL_95583.2
IL_1N36_0891/A/1059:1063,
1/A/1193:1198		Partly complementary
geometric
IL_7VYX_008
IL_49751.4
IL_1N36_0901/A/1116:1118,
1/A/1155:1184		No text annotation
IL_1N36_0771/A/1121:1128,
1/A/1143:1152		No text annotation
IL_1N36_0911/A/1128:1133,
1/A/1141:1143		No text annotation
homologous
IL_6CZR_366
NA
IL_1N36_0481/A/1246:1253,
1/A/1284:1291		No text annotation
IL_1N36_0491/A/1253:1258,
1/A/1277:1284		No text annotation
IL_1N36_0921/A/1255:1262,
1/A/1273:1282		No text annotation
IL_1N36_0501/A/1258:1262,
1/A/1273:1277		Triple sheared
geometric
IL_4V9F_085
IL_17948.2
IL_1N36_0521/A/1303:1308,
1/A/1329:1334		No text annotation
geometric
IL_4LFB_055
IL_85536.2
IL_1N36_0541/A/1399:1401,
1/A/1501:1504		No text annotation
homologous
IL_4LFB_056
IL_61438.4
IL_1N36_0551/A/1401:1404,
1/A/1497:1501		No text annotation
geometric
IL_8CRE_467
IL_65718.4
IL_1N36_0561/A/1405:1407,
1/A/1494:1496		Isolated non-canonical cWW pair
geometric
IL_5MWI_001
IL_28037.2
IL_1N36_0571/A/1407:1409,
1/A/1491:1494		No text annotation
geometric
IL_8UO6_002
IL_31737.3
IL_1N36_0591/A/1412:1414,
1/A/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_1N36_0601/A/1416:1419,
1/A/1481:1484		Double sheared
geometric
IL_5BTP_004
IL_09705.15
IL_1N36_0611/A/1419:1422,
1/A/1479:1481		No text annotation
IL_1N36_0621/A/1422:1423,
1/A/1477:1479		Single stack bend
geometric
IL_4WF9_007
IL_90729.1
IL_1N36_0641/A/1431:1435,
1/A/1466:1469		UAA/GAN variation
geometric
IL_4LFB_062
IL_77691.5
IL_1N36_0651/A/1435:1438,
1/A/1463:1466		Tandem non-canonical cWW pairs
geometric
IL_4K27_001
IL_85033.2
IL_1N36_0661/A/1440:1447,
1/A/1459:1461		No text annotation
homologous
IL_4LFB_064
IL_49061.1

Problematic loops

#loop idProblemSequence
IL_1N36_001Tandem non-canonical cWW pairs
IL_1N36_006No text annotation
IL_1N36_068Isolated non-canonical cWW pair
IL_1N36_009Isolated non-canonical cWW pair
IL_1N36_069No text annotation
IL_1N36_010tWH-tWH-tHW-tHW
IL_1N36_013No text annotation
IL_1N36_014Isolated cWH basepair
IL_1N36_071No text annotation
IL_1N36_072No text annotation
IL_1N36_022Isolated non-canonical cWW pair
IL_1N36_025No text annotation
IL_1N36_073No text annotation
IL_1N36_030No text annotation
IL_1N36_075Isolated non-canonical cWW pair
IL_1N36_035Tandem non-canonical cWW pairs
IL_1N36_038Isolated non-canonical cWW pair
IL_1N36_039Minor groove platform with extra cWW
IL_1N36_040Tandem non-canonical cWW pairs
IL_1N36_043Tandem non-canonical cWW pairs with near WC pairs
IL_1N36_076No text annotation
IL_1N36_044No text annotation
IL_1N36_045No text annotation
IL_1N36_046Tandem non-canonical cWW pairs
IL_1N36_047Tandem non-canonical cWW pairs
IL_1N36_078No text annotation
IL_1N36_079No text annotation
IL_1N36_051Tandem non-canonical cWW pairs
IL_1N36_053Isolated non-canonical cWW pair
IL_1N36_080Tandem non-canonical cWW pairs
IL_1N36_081Partly complementary
IL_1N36_058Isolated non-canonical cWW contact
IL_1N36_063Isolated non-canonical cWW pair
IL_1N36_082Partly complementary
IL_1N36_067Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_1N36_0071/A/46:52,
1/A/359:369,
1/A/392:395		No text annotation
J3_1N36_0081/A/586:588,
1/A/651:654,
1/A/754:755		No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_1N36_0091/A/586:588,
1/A/651:655,
1/A/751:755		No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_1N36_0101/A/672:673,
1/A/717:725,
1/A/732:734		No text annotation
homologous
J3_4LFB_012
J3_11934.4
J3_1N36_0011/A/826:829,
1/A/857:861,
1/A/868:874		No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_1N36_0111/A/936:939,
1/A/1344:1350,
1/A/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_1N36_0021/A/943:946,
1/A/1235:1237,
1/A/1337:1340		No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_1N36_0031/A/955:962,
1/A/973:985,
1/A/1220:1225		No text annotation
homologous
J3_6CZR_062
NA
J3_1N36_0141/A/989:1012,
1/A/1017:1051,
1/A/1207:1216		No text annotation
J3_1N36_0041/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_1N36_0131/A/1073:1074,
1/A/1083:1087,
1/A/1098:1102		No text annotation
homologous
J3_6CZR_024
NA
J3_1N36_0051/A/1115:1118,
1/A/1155:1161,
1/A/1175:1185		No text annotation
J3_1N36_0061/A/1237:1241,
1/A/1296:1303,
1/A/1334:1337		No text annotation
homologous
J3_4LFB_009
J3_37047.6
J4_1N36_0011/A/115:122,
1/A/239:240,
1/A/286:289,
1/A/311:312		No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_1N36_0021/A/142:144,
1/A/178:183,
1/A/194:198,
1/A/219:221		No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_1N36_0031/A/569:577,
1/A/764:769,
1/A/810:821,
1/A/879:881		No text annotation
J5_1N36_0011/A/36:39,
1/A/403:406,
1/A/436:442,
1/A/492:500,
1/A/545:548		No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_1N36_0021/A/54:61,
1/A/106:113,
1/A/314:316,
1/A/337:339,
1/A/350:357		No text annotation

Problematic loops

#loop idProblemSequence
J3_1N36_012No text annotation

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