HL_1N36_041

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

1N36|1|A|U|839, 1N36|1|A|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N36_041 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.2638

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

1N36|1|A|G|838
1N36|1|A|U|839
1N36|1|A|C|840
1N36|1|A|U|841
1N36|1|A|C|848

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2