HL_1NBR_016

3D structure

PDB id

1NBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Iron Responsive Element RNA Hairpin, NMR, 15 Structures

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACAGUGCU

Length

8 nucleotides

Bulged bases

1NBR|6|A|G|15, 1NBR|6|A|C|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NBR_016 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3623

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

1NBR|6|A|A|12
1NBR|6|A|C|13
1NBR|6|A|A|14
1NBR|6|A|G|15
1NBR|6|A|U|16
1NBR|6|A|G|17
1NBR|6|A|C|18
1NBR|6|A|U|19

Current chains

Chain A

RNA HAIRPIN

Nearby chains