1NBR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1NBR_001 | 1/A/13:17 | No text annotation | geometric HL_4V9F_003 HL_75660.9 | |
| HL_1NBR_002 | 2/A/13:17 | No text annotation | geometric HL_4V9F_003 HL_75660.9 | |
| HL_1NBR_003 | 3/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1NBR_004 | 4/A/13:17 | No text annotation | geometric HL_4V9F_003 HL_75660.9 | |
| HL_1NBR_005 | 5/A/13:17 | No text annotation | geometric HL_4V9F_003 HL_75660.9 | |
| HL_1NBR_016 | 6/A/12:19 | tRNA D-loop | geometric HL_1FIR_001 NA | |
| HL_1NBR_006 | 6/A/13:17 | No text annotation | geometric HL_8C3A_006 NA | |
| HL_1NBR_007 | 7/A/13:17 | No text annotation | geometric HL_4V9F_003 HL_75660.9 | |
| HL_1NBR_017 | 8/A/12:19 | No text annotation | ||
| HL_1NBR_008 | 8/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1NBR_009 | 9/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1NBR_018 | 10/A/12:19 | tRNA D-loop | geometric HL_1FIR_001 NA | |
| HL_1NBR_010 | 10/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1NBR_011 | 11/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1NBR_019 | 12/A/12:19 | No text annotation | geometric HL_1KH6_003 HL_33487.2 | |
| HL_1NBR_012 | 12/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1NBR_020 | 13/A/12:19 | tRNA D-loop | geometric HL_1FIR_001 NA | |
| HL_1NBR_013 | 13/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1NBR_014 | 14/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 | |
| HL_1NBR_021 | 15/A/12:19 | tRNA D-loop | geometric HL_1FIR_001 NA | |
| HL_1NBR_015 | 15/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.9 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1NBR_001 | 1/A/6:8, 1/A/23:24 | Single bulged C | geometric IL_7RQB_108 NA | |
| IL_1NBR_003 | 1/A/12:13, 1/A/17:19 | No text annotation | ||
| IL_1NBR_036 | 2/A/6:9, 2/A/22:24 | Isolated non-canonical cWW pair | geometric IL_4KYY_002 IL_71625.4 | |
| IL_1NBR_005 | 2/A/12:13, 2/A/17:19 | No text annotation | ||
| IL_1NBR_006 | 3/A/6:8, 3/A/23:24 | Single bulged C | geometric IL_7RQB_108 NA | |
| IL_1NBR_007 | 3/A/12:13, 3/A/17:19 | No text annotation | ||
| IL_1NBR_041 | 4/A/6:8, 4/A/23:24 | Major groove intercalation | geometric IL_9DFE_107 IL_05642.4 | |
| IL_1NBR_009 | 4/A/12:13, 4/A/17:19 | No text annotation | ||
| IL_1NBR_037 | 5/A/6:8, 5/A/23:24 | No text annotation | geometric IL_9E6Q_038 IL_05642.4 | |
| IL_1NBR_012 | 5/A/12:13, 5/A/17:19 | No text annotation | ||
| IL_1NBR_013 | 6/A/6:8, 6/A/23:24 | Single bulged C | geometric IL_7RQB_108 NA | |
| IL_1NBR_014 | 6/A/12:13, 6/A/17:19 | No text annotation | ||
| IL_1NBR_015 | 7/A/6:8, 7/A/23:24 | Single bulged C | geometric IL_7RQB_108 NA | |
| IL_1NBR_016 | 7/A/12:13, 7/A/17:19 | No text annotation | ||
| IL_1NBR_017 | 8/A/6:8, 8/A/23:24 | Single bulged C | geometric IL_7RQB_108 NA | |
| IL_1NBR_019 | 8/A/12:13, 8/A/17:19 | No text annotation | ||
| IL_1NBR_020 | 9/A/6:9, 9/A/22:24 | Isolated non-canonical cWW pair | geometric IL_4KYY_002 IL_71625.4 | |
| IL_1NBR_021 | 9/A/12:13, 9/A/17:19 | No text annotation | ||
| IL_1NBR_022 | 10/A/6:8, 10/A/23:24 | Major groove platform | geometric IL_1S03_004 IL_48076.9 | |
| IL_1NBR_023 | 10/A/12:13, 10/A/17:19 | No text annotation | ||
| IL_1NBR_042 | 11/A/6:8, 11/A/23:24 | Major groove intercalation | geometric IL_9DFE_107 IL_05642.4 | |
| IL_1NBR_027 | 11/A/12:13, 11/A/17:19 | No text annotation | ||
| IL_1NBR_028 | 12/A/6:8, 12/A/23:24 | Major groove intercalation | geometric IL_3IWN_004 IL_71421.4 | |
| IL_1NBR_029 | 12/A/12:13, 12/A/17:19 | No text annotation | ||
| IL_1NBR_038 | 13/A/6:8, 13/A/23:24 | Major groove platform | geometric IL_1S03_008 IL_48076.9 | |
| IL_1NBR_031 | 13/A/12:13, 13/A/17:19 | No text annotation | ||
| IL_1NBR_039 | 14/A/6:8, 14/A/23:24 | No text annotation | ||
| IL_1NBR_040 | 14/A/12:13, 14/A/17:19 | No text annotation | ||
| IL_1NBR_034 | 15/A/6:8, 15/A/23:24 | No text annotation | ||
| IL_1NBR_035 | 15/A/12:13, 15/A/17:19 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1NBR_002 | Isolated non-canonical cWW pair | ||
| IL_1NBR_004 | No text annotation | ||
| IL_1NBR_008 | Isolated non-canonical cWW pair | ||
| IL_1NBR_010 | Single bulged G, near cWW | ||
| IL_1NBR_011 | Isolated cWH basepair | ||
| IL_1NBR_018 | Tandem non-canonical cWW pairs | ||
| IL_1NBR_024 | Isolated non-canonical cWW pair | ||
| IL_1NBR_025 | Isolated non-canonical cWW pair | ||
| IL_1NBR_026 | Isolated non-canonical cWW with bulges | ||
| IL_1NBR_030 | Major groove platform with extra cWW | ||
| IL_1NBR_032 | Major groove platform with extra cWW | ||
| IL_1NBR_033 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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