HL_1NC0_014

3D structure

PDB id

1NC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

U80G U6 Intramolecular Stem-Loop RNA from Saccharomyces cerevisiae

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGCAUAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NC0_014 not in the Motif Atlas

Geometric match to HL_4LFB_022

Geometric discrepancy: 0.3672

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

1NC0|14|A|U|9
1NC0|14|A|G|10
1NC0|14|A|C|11
1NC0|14|A|A|12
1NC0|14|A|U|13
1NC0|14|A|A|14
1NC0|14|A|A|15

Current chains

Chain A

U80G U6 RNA Intramolecular Stem-Loop

Nearby chains