HL_1NJI_006

3D structure

PDB id

1NJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of chloramphenicol bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

1NJI|1|A|A|166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJI_006 not in the Motif Atlas

Homologous match to HL_4V9F_006

Geometric discrepancy: 0.0301

The information below is about HL_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

1NJI|1|A|G|164
1NJI|1|A|A|165
1NJI|1|A|A|166
1NJI|1|A|A|167
1NJI|1|A|C|168
1NJI|1|A|A|169
1NJI|1|A|U|170
1NJI|1|A|C|171

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L44E

Chain M

50S ribosomal protein L15P

Chain N

50S ribosomal protein L15E