Motif HL_48677.1 Version HL_48677.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8GLP_068 | 8GLP | 0.7370 | 1 | L5 | LSU rRNA | U | 4497 | OMU | 4498 | OMG | 4499 | PSU | 4500 | C | 4502 | A | 4503 | cWW | ||
| 2 | HL_8P9A_174 | 8P9A | 0.5963 | 1 | AR | LSU rRNA | U | 2920 | U | 2921 | G | 2922 | U | 2923 | C | 2925 | A | 2926 | cWW | ||
| 3 | HL_8OI5_059 | 8OI5 | 0.5870 | 1 | 1 | LSU rRNA | U | 2892 | U | 2893 | G | 2894 | U | 2895 | C | 2897 | A | 2898 | cWW | ||
| 4 | HL_4V9F_073 | 4V9F | 0.6188 | 1 | 0 | LSU rRNA | U | 2586 | OMU | 2587 | OMG | 2588 | U | 2589 | C | 2591 | G | 2592 | cWWa | ||
| 5 | HL_9DFE_060 | 9DFE | 0.5796 | 1 | 1A | LSU rRNA | C | 2551 | OMU | 2552 | G | 2553 | U | 2554 | C | 2556 | G | 2557 | cWW | ||
| 6 | HL_8B0X_089 | 8B0X | 0.5685 | 1 | a | LSU rRNA | C | 2555 | OMU | 2556 | G | 2557 | U | 2558 | C | 2560 | G | 2561 | cWW | ||
| 7 | HL_4WF9_058 | 4WF9 | 0.5577 | 1 | X | LSU rRNA | C | 2578 | U | 2579 | G | 2580 | U | 2581 | C | 2583 | G | 2584 | cWW | ||
| 8 | HL_7A0S_061 | 7A0S | 0.6002 | 1 | X | LSU rRNA | C | 2530 | U | 2531 | G | 2532 | U | 2533 | C | 2535 | G | 2536 | cWW | ||
| 9 | HL_9E6Q_060 | 9E6Q | 0.5906 | 1 | 1 | LSU rRNA | C | 2665 | OMU | 2666 | OMG | 2667 | C | 2668 | C | 2670 | G | 2671 | cWW | ||
| 10 | HL_9AXU_059 | 9AXU | 0.5925 | 1 | 2 | LSU rRNA | U | 3015 | U | 3016 | G | 3017 | U | 3018 | C | 3020 | A | 3021 | cWW | ntSH | |
| 11 | HL_7A0S_006 | 7A0S | 0.1219 | 2 | X | LSU rRNA | G | 171 | A | 172 | A | 174 | C | 175 | U | 177 | C | 178 | cWW | ntSH | |
| 12 | HL_9DFE_005 | 9DFE | 0.0975 | 2 | 1A | LSU rRNA | G | 194 | A | 195 | A | 197 | C | 198 | U | 200 | C | 201 | cWW | ntSH | |
| 13 | HL_8B0X_038 | 8B0X | 0.0832 | 2 | a | LSU rRNA | G | 194 | A | 195 | A | 197 | C | 198 | U | 200 | C | 201 | cWW | ntSH | |
| 14 | HL_4WF9_006 | 4WF9 | 0.0884 | 2 | X | LSU rRNA | G | 197 | A | 198 | A | 200 | C | 201 | U | 203 | C | 204 | cWW | tSH | |
| 15 | HL_9E6Q_006 | 9E6Q | 0.1081 | 2 | 1 | LSU rRNA | G | 175 | A | 176 | A | 178 | C | 179 | U | 181 | C | 182 | cWW | tSH | |
| 16 | HL_4V9F_006 | 4V9F | 0.0840 | 2 | 0 | LSU rRNA | G | 164 | A | 165 | A | 167 | C | 168 | U | 170 | C | 171 | cWW | tSH | |
| 17 | HL_9AXU_001 | 9AXU | 0.0429 | 2 | 2 | LSU rRNA | U | 38 | A | 39 | G | 41 | C | 42 | U | 44 | A | 45 | cWW | tSH | |
| 18 | HL_8GLP_001 | 8GLP | 0.0000 | 2 | L5 | LSU rRNA | U | 37 | A | 38 | G | 40 | C | 41 | U | 43 | A | 44 | cWW | tSH | |
| 19 | HL_8OI5_001 | 8OI5 | 0.0674 | 2 | 1 | LSU rRNA | U | 37 | A | 38 | G | 40 | C | 41 | U | 43 | A | 44 | cWW | tSH | |
| 20 | HL_8P9A_113 | 8P9A | 0.0648 | 2 | AR | LSU rRNA | U | 38 | A | 39 | G | 41 | C | 42 | U | 44 | A | 45 | cWW | tSH | |
| 21 | HL_3DIL_003 | 3DIL | 0.6037 | 1 | GNRA | A | RNA (174-MER) | G | 124 | G | 125 | A | 126 | A | 127 | A | 129 | C | 130 | cWW | tSH |
| 22 | HL_3AKZ_011 | 3AKZ | 0.8712 | 3 | E | tRNAGln | A | 31 | C | 32 | C | 34 | U | 35 | A | 38 | U | 39 | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAUC | 6 |
| UAAGCAUA | 4 |
| UUGUUCA | 3 |
| CUGUUCG | 2 |
| UUCA | 1 |
| U(OMU)(OMG)UUCG | 1 |
| C(OMU)GUUCG | 1 |
| CGUUCG | 1 |
| C(OMU)(OMG)CCCG | 1 |
| GGAAUAC | 1 |
| ACUCUGGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACAU | 6 |
| UGUUC | 5 |
| AAGCAU | 4 |
| (OMU)GUUC | 2 |
| (OMU)(OMG)(PSU)UC | 1 |
| (OMU)(OMG)UUC | 1 |
| (OMU)(OMG)CCC | 1 |
| GAAUA | 1 |
| CUCUGGA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (21)
- GNRA (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.04 | Avg 0.44 | Max 0.92
Coloring options: