HL_1NJI_064
3D structure
- PDB id
- 1NJI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of chloramphenicol bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUUGUUCGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1NJI_064 not in the Motif Atlas
- Geometric match to HL_4WF9_041
- Geometric discrepancy: 0.3955
- The information below is about HL_4WF9_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_65167.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
1NJI|1|A|G|2585
1NJI|1|A|U|2586
1NJI|1|A|U|2587
1NJI|1|A|G|2588
1NJI|1|A|U|2589
1NJI|1|A|U|2590
1NJI|1|A|C|2591
1NJI|1|A|G|2592
1NJI|1|A|C|2593
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3P
- Chain L
- 50S ribosomal protein L14P
Coloring options: