Motif HL_65167.1 Version HL_65167.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-5 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZNI_002 | 2ZNI | 0.7577 | 1 | C | bacterial tRNA | A | 31 | C | 32 | U | 33 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW | |||
| 2 | HL_7PMQ_003 | 7PMQ | 0.6582 | 0 | Anticodon loop related | F | RNA (42-MER) | G | 8 | U | 9 | U | 10 | U | 11 | C | 12 | G | 13 | A | 14 | C | 15 | cWW | |||
| 3 | HL_3W3S_002 | 3W3S | 0.5478 | 1 | tRNA anticodon loop | B | Selenocysteine transfer RNA | A | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ||
| 4 | HL_8VTW_056 | 8VTW | 0.4226 | 0 | GNRA with extra cWW | 1A | LSU rRNA | C | 2355 | C | 2356 | U | 2357 | G | 2358 | C | 2359 | A | 2360 | A | 2361 | G | 2362 | cWW | ncWW | ||
| 5 | HL_4WF9_053 | 4WF9 | 0.4770 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2382 | C | 2383 | U | 2384 | A | 2385 | C | 2386 | A | 2387 | A | 2388 | G | 2389 | cWW | ncWW | ||
| 6 | HL_7A0S_056 | 7A0S | 0.4227 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2334 | U | 2335 | G | 2336 | A | 2337 | C | 2338 | A | 2339 | C | 2340 | G | 2341 | cWW | ntSH | ||
| 7 | HL_8KAL_001 | 8KAL | 0.6189 | 0 | GNRA with extra cWW | A | tracrRNA | U | 31 | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | A | 38 | ncWW | |||
| 8 | HL_3RG5_006 | 3RG5 | 0.5467 | 1 | tRNA anticodon loop | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW | ||
| 9 | HL_7QR8_003 | 7QR8 | 0.5495 | 0 | GNRA with extra tWH | A | tracrRNA | U | 71 | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | A | 78 | cWW | ntSH | ||
| 10 | HL_4V9F_032 | 4V9F | 0.6186 | 1 | Anticodon loop related | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH | |
| 11 | HL_5UD5_002 | 5UD5 | 0.5800 | 1 | tRNA anticodon loop | C | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ntSH | |
| 12 | HL_2D6F_005 | 2D6F | 0.5219 | 1 | tRNA anticodon loop | F | tRNA | G | 931 | C | 932 | U | 933 | U | 934 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | cWW | ||
| 13 | HL_1J2B_001 | 1J2B | 0.5176 | 1 | C | tRNA(Val) | C | 932 | C | 933 | U | 934 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | cWW | |||
| 14 | HL_4WF9_041 | 4WF9 | 0.4670 | 0 | X | LSU rRNA | G | 1761 | U | 1762 | U | 1763 | A | 1764 | A | 1765 | C | 1766 | G | 1767 | C | 1768 | cWW | ncWW | ntsS | ||
| 15 | HL_4JXZ_002 | 4JXZ | 0.1559 | 1 | tRNA anticodon loop | B | tRNA | U | 931 | U | 932 | U | 933 | U | 934 | U | 935 | A | 937 | U | 938 | A | 939 | cWW | ntSH | ||
| 16 | HL_1QTQ_002 | 1QTQ | 0.0000 | 1 | tRNA anticodon loop | B | tRNA | A | 931 | U | 932 | U | 933 | C | 934 | U | 935 | A | 937 | U | 938 | U | 939 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCUAAAU | 2 |
| GUUUCGAC | 1 |
| ACUUCAAAU | 1 |
| CCUGCAAG | 1 |
| CCUACAAG | 1 |
| CUGACACG | 1 |
| UAGAAAUA | 1 |
| GCUUCAAAC | 1 |
| UUGAAAAA | 1 |
| ACUCAUACU | 1 |
| GCUUUGGAC | 1 |
| CCUUACGAG | 1 |
| GUUAACGC | 1 |
| UUUUUGAUA | 1 |
| AUUCUGAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCUAAA | 2 |
| CUUCAAA | 2 |
| UUUCGA | 1 |
| CUGCAA | 1 |
| CUACAA | 1 |
| UGACAC | 1 |
| AGAAAU | 1 |
| UGAAAA | 1 |
| CUCAUAC | 1 |
| CUUUGGA | 1 |
| CUUACGA | 1 |
| UUAACG | 1 |
| UUUUGAU | 1 |
| UUCUGAU | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA anticodon loop (6)
- GNRA with extra cWW (4)
- (3)
- Anticodon loop related (2)
- GNRA with extra tWH (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.44 | Max 0.76
Coloring options: