HL_1NJM_009

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

1NJM|1|0|G|319, 1NJM|1|0|A|320, 1NJM|1|0|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.3395

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

1NJM|1|0|C|316
1NJM|1|0|U|317
1NJM|1|0|G|318
1NJM|1|0|G|319
1NJM|1|0|A|320
1NJM|1|0|A|321
1NJM|1|0|A|322
1NJM|1|0|G|323

Current chains

Chain 0

23S ribosomal RNA

Nearby chains