HL_1NJM_011

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

1NJM|1|0|G|340, 1NJM|1|0|A|341, 1NJM|1|0|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.5488

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

1NJM|1|0|G|338
1NJM|1|0|U|339
1NJM|1|0|G|340
1NJM|1|0|A|341
1NJM|1|0|G|342
1NJM|1|0|A|343
1NJM|1|0|G|344
1NJM|1|0|U|345
1NJM|1|0|C|346

Current chains

Chain 0

23S ribosomal RNA

Nearby chains