HL_1NJM_013

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

1NJM|1|0|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0907

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1NJM|1|0|G|423
1NJM|1|0|G|424
1NJM|1|0|A|425
1NJM|1|0|C|426
1NJM|1|0|C|427
1NJM|1|0|A|428
1NJM|1|0|C|429
1NJM|1|0|C|430

Current chains

Chain 0

23S ribosomal RNA

Nearby chains