HL_1NJM_032

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_032 not in the Motif Atlas

Geometric match to HL_4V9F_034

Geometric discrepancy: 0.3039

The information below is about HL_4V9F_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1NJM|1|0|G|1294
1NJM|1|0|U|1295
1NJM|1|0|G|1296
1NJM|1|0|A|1297
1NJM|1|0|G|1298
1NJM|1|0|A|1299
1NJM|1|0|A|1300
1NJM|1|0|U|1301
1NJM|1|0|C|1302

Current chains

Chain 0

23S ribosomal RNA

Nearby chains