HL_1NJM_037

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAAAUC

Length

7 nucleotides

Bulged bases

1NJM|1|0|A|1509, 1NJM|1|0|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_037 not in the Motif Atlas

Geometric match to HL_7RQB_038

Geometric discrepancy: 0.3269

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

1NJM|1|0|G|1508
1NJM|1|0|A|1509
1NJM|1|0|A|1510
1NJM|1|0|A|1511
1NJM|1|0|A|1512
1NJM|1|0|U|1513
1NJM|1|0|C|1514

Current chains

Chain 0

23S ribosomal RNA

Nearby chains