#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4 51-5
1 HL_3V7E_0013V7E0.51692Pseudoknot geometryCG23U26G27G28C29cWW
2 HL_5FJC_0015FJC0.45472Pseudoknot geometryAG23U26G27G28C29cWW
3 HL_4AOB_0014AOB0.43742Pseudoknot geometryAG23U26G27G28C29cWW
4 HL_6MWN_0046MWN0.43582Pseudoknot geometryBG650G653G654A655C656cWW
5 HL_4KQY_0014KQY0.38232Pseudoknot geometryAG23U26G27G28C29cWW
6 HL_6VMY_0036VMY0.44942Pseudoknot geometryAG268C271C272G273C274cWW
7 HL_5U30_0025U300.41462Pseudoknot geometryBU43C46C47A48G49cWW
8 HL_1U6B_0021U6B0.34151Pseudoknot geometryBC70C72C73C74G75cWW
9 HL_5TBW_0665TBW0.00001Ribsomal LSU H951U3068A3070U3071C3072A3073cWW
10 HL_8C3A_0678C3A0.08441Ribsomal LSU H951U3040A3042U3043C3044A3045cWW
11 HL_4V9F_0674V9F0.17871Ribsomal LSU H950C2737A2739G2740A2741G2742cWW
12 HL_6UFM_0056UFM0.23381Pseudoknot geometryBG50A52A53A54C55cWW
13 HL_5J7L_1985J7L0.22911Ribsomal LSU H95DAU2701C2703C2704A2705A2706cWW
14 HL_7A0S_0647A0S0.20961Ribsomal LSU H95XU2680C2682C2683A2684A2685cWW
15 HL_4WF9_0614WF90.25131Ribsomal LSU H95XU2728C2730C2731A2732A2733cWW
16 HL_4PQV_0024PQV0.40692Pseudoknot geometryAC28C30C31G32G34cWW
17 HL_7A0S_0377A0S0.65452XG1508A1510A1511A1512C1514ncWW
18 HL_5J7L_1665J7L0.71892Pseudoknot geometry with 3' bulgeDAG1324U1326A1327A1328C1330cWW
19 HL_4V9F_0354V9F0.67742Pseudoknot geometry with 3' bulge0G1430U1432G1433A1434C1436cWW
20 HL_4WF9_0334WF90.67682Pseudoknot geometry with 3' bulgeXG1361U1363C1364G1365C1367cWW
21 HL_7RQB_0347RQB0.74102Pseudoknot geometry with 3' bulge (H)1AG1324U1326C1327G1328C1330cWW
22 HL_7A0S_0337A0S0.75622Pseudoknot geometry with 3' bulgeXG1337U1339C1340G1341C1343cWW
23 HL_8C3A_0328C3A0.84492Pseudoknot geometry with 3' bulge1A1502C1504A1505G1506U1508cWW
24 HL_5TBW_0325TBW0.83002Pseudoknot geometry with 3' bulge1A1506C1508A1509G1510U1512cWW
25 HL_5J7L_1705J7L0.70452Pseudoknot geometry with 3' bulgeDAG1492A1494A1495A1496C1498cWW
26 HL_7RQB_0387RQB0.69692Pseudoknot geometry with 3' bulge (H)1AG1492A1494A1495A1496C1498cWW
27 HL_4OQU_0024OQU0.75594Pseudoknot geometryAG32G36A37C38C40cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACUGGC4
UGAUCA2
UGCCAA2
GGUCGUC2
AGCAGUU2
GCAAAUC2
GCUGGAC1
GUCCCGC1
UUUCCAG1
CGCCCG1
CGAGAG1
GGAAAC1
UACCAA1
CGCCGAG1
GAAAAUC1
GUUAAUC1
GCUGAUC1
GCUCGUC1
GACGGACAC1
Non-Watson-Crick part of the motif
SequenceCounts
ACUGG4
GAUC2
GCCA2
GUCGU2
GCAGU2
CAAAU2
CUGGA1
UCCCG1
UUCCA1
GCCC1
GAGA1
GAAA1
ACCA1
GCCGA1
AAAAU1
UUAAU1
CUGAU1
CUCGU1
ACGGACA1

Release history

Release3.803.813.823.833.843.853.86
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-17
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry (11)
  • Pseudoknot geometry with 3' bulge (7)
  • Ribsomal LSU H95 (6)
  • Pseudoknot geometry with 3' bulge (H) (2)
  • (1)
  • Basepair signature
    cWW-F-F-F
    Heat map statistics
    Min 0.06 | Avg 0.54 | Max 0.94
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