HL_46680.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4		5	1-5
1	HL_3V7E_001	3V7E	0.5169	2	Pseudoknot geometry	C	G	23	U	26	G	27	G	28	C	29	cWW
2	HL_5FJC_001	5FJC	0.4547	2	Pseudoknot geometry	A	G	23	U	26	G	27	G	28	C	29	cWW
3	HL_4AOB_001	4AOB	0.4374	2	Pseudoknot geometry	A	G	23	U	26	G	27	G	28	C	29	cWW
4	HL_6MWN_004	6MWN	0.4358	2	Pseudoknot geometry	B	G	650	G	653	G	654	A	655	C	656	cWW
5	HL_4KQY_001	4KQY	0.3823	2	Pseudoknot geometry	A	G	23	U	26	G	27	G	28	C	29	cWW
6	HL_6VMY_003	6VMY	0.4494	2	Pseudoknot geometry	A	G	268	C	271	C	272	G	273	C	274	cWW
7	HL_5U30_002	5U30	0.4146	2	Pseudoknot geometry	B	U	43	C	46	C	47	A	48	G	49	cWW
8	HL_1U6B_002	1U6B	0.3415	1	Pseudoknot geometry	B	C	70	C	72	C	73	C	74	G	75	cWW
9	HL_5TBW_066	5TBW	0.0000	1	Ribsomal LSU H95	1	U	3068	A	3070	U	3071	C	3072	A	3073	cWW
10	HL_8C3A_067	8C3A	0.0844	1	Ribsomal LSU H95	1	U	3040	A	3042	U	3043	C	3044	A	3045	cWW
11	HL_4V9F_067	4V9F	0.1787	1	Ribsomal LSU H95	0	C	2737	A	2739	G	2740	A	2741	G	2742	cWW
12	HL_6UFM_005	6UFM	0.2338	1	Pseudoknot geometry	B	G	50	A	52	A	53	A	54	C	55	cWW
13	HL_5J7L_198	5J7L	0.2291	1	Ribsomal LSU H95	DA	U	2701	C	2703	C	2704	A	2705	A	2706	cWW
14	HL_7A0S_064	7A0S	0.2096	1	Ribsomal LSU H95	X	U	2680	C	2682	C	2683	A	2684	A	2685	cWW
15	HL_4WF9_061	4WF9	0.2513	1	Ribsomal LSU H95	X	U	2728	C	2730	C	2731	A	2732	A	2733	cWW
16	HL_4PQV_002	4PQV	0.4069	2	Pseudoknot geometry	A	C	28	C	30	C	31	G	32	G	34	cWW
17	HL_7A0S_037	7A0S	0.6545	2		X	G	1508	A	1510	A	1511	A	1512	C	1514	ncWW
18	HL_5J7L_166	5J7L	0.7189	2	Pseudoknot geometry with 3' bulge	DA	G	1324	U	1326	A	1327	A	1328	C	1330	cWW
19	HL_4V9F_035	4V9F	0.6774	2	Pseudoknot geometry with 3' bulge	0	G	1430	U	1432	G	1433	A	1434	C	1436	cWW
20	HL_4WF9_033	4WF9	0.6768	2	Pseudoknot geometry with 3' bulge	X	G	1361	U	1363	C	1364	G	1365	C	1367	cWW
21	HL_7RQB_034	7RQB	0.7410	2	Pseudoknot geometry with 3' bulge (H)	1A	G	1324	U	1326	C	1327	G	1328	C	1330	cWW
22	HL_7A0S_033	7A0S	0.7562	2	Pseudoknot geometry with 3' bulge	X	G	1337	U	1339	C	1340	G	1341	C	1343	cWW
23	HL_8C3A_032	8C3A	0.8449	2	Pseudoknot geometry with 3' bulge	1	A	1502	C	1504	A	1505	G	1506	U	1508	cWW
24	HL_5TBW_032	5TBW	0.8300	2	Pseudoknot geometry with 3' bulge	1	A	1506	C	1508	A	1509	G	1510	U	1512	cWW
25	HL_5J7L_170	5J7L	0.7045	2	Pseudoknot geometry with 3' bulge	DA	G	1492	A	1494	A	1495	A	1496	C	1498	cWW
26	HL_7RQB_038	7RQB	0.6969	2	Pseudoknot geometry with 3' bulge (H)	1A	G	1492	A	1494	A	1495	A	1496	C	1498	cWW
27	HL_4OQU_002	4OQU	0.7559	4	Pseudoknot geometry	A	G	32	G	36	A	37	C	38	C	40	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GACUGGC	4
UGAUCA	2
UGCCAA	2
GGUCGUC	2
AGCAGUU	2
GCAAAUC	2
GCUGGAC	1
GUCCCGC	1
UUUCCAG	1
CGCCCG	1
CGAGAG	1
GGAAAC	1
UACCAA	1
CGCCGAG	1
GAAAAUC	1
GUUAAUC	1
GCUGAUC	1
GCUCGUC	1
GACGGACAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACUGG	4
GAUC	2
GCCA	2
GUCGU	2
GCAGU	2
CAAAU	2
CUGGA	1
UCCCG	1
UUCCA	1
GCCC	1
GAGA	1
GAAA	1
ACCA	1
GCCGA	1
AAAAU	1
UUAAU	1
CUGAU	1
CUCGU	1
ACGGACA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_46680.1 Version HL_46680.1 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_46680.1 Version HL_46680.1 of this group appears in releases 3.80 to 3.86

Download

Csv

Json