HL_1NJM_048

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

1NJM|1|0|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_048 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2791

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1NJM|1|0|G|1932
1NJM|1|0|G|1933
1NJM|1|0|U|1934
1NJM|1|0|A|1935
1NJM|1|0|A|1936
1NJM|1|0|G|1937
1NJM|1|0|U|1938
1NJM|1|0|U|1939
1NJM|1|0|C|1940

Current chains

Chain 0

23S ribosomal RNA

Nearby chains