HL_1NJM_060

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_060 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.2644

The information below is about HL_4WF9_058

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

1NJM|1|0|C|2530
1NJM|1|0|U|2531
1NJM|1|0|G|2532
1NJM|1|0|U|2533
1NJM|1|0|U|2534
1NJM|1|0|C|2535
1NJM|1|0|G|2536

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 5

tRNA acceptor stem mimic