HL_48677.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	1-6	2-5
1	HL_8GLP_068	8GLP	0.7370	1	LSU A loop	L5	LSU rRNA	U	4497	OMU	4498	OMG	4499	PSU	4500	C	4502	A	4503	cWW
2	HL_8P9A_174	8P9A	0.5963	1	LSU A loop	AR	LSU rRNA	U	2920	U	2921	G	2922	U	2923	C	2925	A	2926	cWW
3	HL_8OI5_059	8OI5	0.5870	1	LSU A loop	1	LSU rRNA	U	2892	U	2893	G	2894	U	2895	C	2897	A	2898	cWW
4	HL_9H3G_064	9H3G	0.5905	1		A	LSU rRNA	U	2919	OMU	2920	OMG	2921	PSU	2922	C	2924	A	2925	cWW
5	HL_4V9F_073	4V9F	0.6188	1	LSU A loop	0	LSU rRNA	U	2586	OMU	2587	OMG	2588	U	2589	C	2591	G	2592	cWWa
6	HL_9DFE_060	9DFE	0.5796	1	LSU A loop	1A	LSU rRNA	C	2551	OMU	2552	G	2553	U	2554	C	2556	G	2557	cWW
7	HL_8B0X_089	8B0X	0.5685	1	LSU A loop	a	LSU rRNA	C	2555	OMU	2556	G	2557	U	2558	C	2560	G	2561	cWW
8	HL_4WF9_058	4WF9	0.5577	1	LSU A loop	X	LSU rRNA	C	2578	U	2579	G	2580	U	2581	C	2583	G	2584	cWW
9	HL_7A0S_061	7A0S	0.6002	1	LSU A loop	X	LSU rRNA	C	2530	U	2531	G	2532	U	2533	C	2535	G	2536	cWW
10	HL_9E6Q_060	9E6Q	0.5906	1	LSU A loop	1	LSU rRNA	C	2665	OMU	2666	OMG	2667	C	2668	C	2670	G	2671	cWW
11	HL_9AXU_059	9AXU	0.5925	1	LSU A loop	2	LSU rRNA	U	3015	U	3016	G	3017	U	3018	C	3020	A	3021	cWW	ntSH
12	HL_7A0S_006	7A0S	0.1219	2		X	LSU rRNA	G	171	A	172	A	174	C	175	U	177	C	178	cWW	ntSH
13	HL_9DFE_005	9DFE	0.0975	2		1A	LSU rRNA	G	194	A	195	A	197	C	198	U	200	C	201	cWW	ntSH
14	HL_8B0X_038	8B0X	0.0832	2		a	LSU rRNA	G	194	A	195	A	197	C	198	U	200	C	201	cWW	ntSH
15	HL_4WF9_006	4WF9	0.0884	2		X	LSU rRNA	G	197	A	198	A	200	C	201	U	203	C	204	cWW	tSH
16	HL_9E6Q_006	9E6Q	0.1081	2		1	LSU rRNA	G	175	A	176	A	178	C	179	U	181	C	182	cWW	tSH
17	HL_4V9F_006	4V9F	0.0840	2		0	LSU rRNA	G	164	A	165	A	167	C	168	U	170	C	171	cWW	tSH
18	HL_9AXU_001	9AXU	0.0429	2		2	LSU rRNA	U	38	A	39	G	41	C	42	U	44	A	45	cWW	tSH
19	HL_9H3G_005	9H3G	0.0411	2		A	LSU rRNA	U	36	A	37	G	39	C	40	PSU	42	A	43	cWW	tSH
20	HL_8GLP_001	8GLP	0.0000	2		L5	LSU rRNA	U	37	A	38	G	40	C	41	U	43	A	44	cWW	tSH
21	HL_8OI5_001	8OI5	0.0674	2		1	LSU rRNA	U	37	A	38	G	40	C	41	U	43	A	44	cWW	tSH
22	HL_8P9A_113	8P9A	0.0648	2		AR	LSU rRNA	U	38	A	39	G	41	C	42	U	44	A	45	cWW	tSH
23	HL_3DIL_003	3DIL	0.6037	1	GNRA	A	Lysine riboswitch	G	124	G	125	A	126	A	127	A	129	C	130	cWW	tSH
24	HL_3AKZ_011	3AKZ	0.8712	3		E	tRNA	A	31	C	32	C	34	U	35	A	38	U	39	cWW	ncSW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAUC	6
UAAGCAUA	4
UUGUUCA	3
CUGUUCG	2
UUCA	1
U(OMU)(OMG)(PSU)UCA	1
U(OMU)(OMG)UUCG	1
C(OMU)GUUCG	1
CGUUCG	1
C(OMU)(OMG)CCCG	1
UAAGCA(PSU)A	1
GGAAUAC	1
ACUCUGGAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAACAU	6
UGUUC	5
AAGCAU	4
(OMU)(OMG)(PSU)UC	2
(OMU)GUUC	2
(OMU)(OMG)UUC	1
(OMU)(OMG)CCC	1
AAGCA(PSU)	1
GAAUA	1
CUCUGGA	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_48677.2 Version HL_48677.2 of this group appears in releases 4.7 to 4.7 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_48677.2 Version HL_48677.2 of this group appears in releases 4.7 to 4.7

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Csv

Json