HL_1NJM_078

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1NJM|1|0|A|1081, 1NJM|1|0|G|1082, 1NJM|1|0|C|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_078 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4189

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

1NJM|1|0|C|1075
1NJM|1|0|U|1076
1NJM|1|0|U|1077
1NJM|1|0|A|1078
1NJM|1|0|G|1079
1NJM|1|0|A|1080
1NJM|1|0|A|1081
1NJM|1|0|G|1082
1NJM|1|0|C|1083
1NJM|1|0|A|1084
1NJM|1|0|G|1085

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain T

GENERAL STRESS PROTEIN CTC