HL_1NJN_023

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

1NJN|1|0|A|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJN_023 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3817

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

1NJN|1|0|G|791
1NJN|1|0|U|792
1NJN|1|0|G|793
1NJN|1|0|A|794
1NJN|1|0|A|795
1NJN|1|0|A|796
1NJN|1|0|A|797
1NJN|1|0|G|798
1NJN|1|0|C|799

Current chains

Chain 0

23S ribosomal RNA

Nearby chains