HL_1NJN_048

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

1NJN|1|0|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJN_048 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.282

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1NJN|1|0|G|1932
1NJN|1|0|G|1933
1NJN|1|0|U|1934
1NJN|1|0|A|1935
1NJN|1|0|A|1936
1NJN|1|0|G|1937
1NJN|1|0|U|1938
1NJN|1|0|U|1939
1NJN|1|0|C|1940

Current chains

Chain 0

23S ribosomal RNA

Nearby chains