HL_1NJO_009

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

1NJO|1|0|G|319, 1NJO|1|0|A|320, 1NJO|1|0|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.3398

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

1NJO|1|0|C|316
1NJO|1|0|U|317
1NJO|1|0|G|318
1NJO|1|0|G|319
1NJO|1|0|A|320
1NJO|1|0|A|321
1NJO|1|0|A|322
1NJO|1|0|G|323

Current chains

Chain 0

23S ribosomal RNA

Nearby chains