HL_1NJO_032

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_032 not in the Motif Atlas

Geometric match to HL_4V9F_034

Geometric discrepancy: 0.3045

The information below is about HL_4V9F_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1NJO|1|0|G|1294
1NJO|1|0|U|1295
1NJO|1|0|G|1296
1NJO|1|0|A|1297
1NJO|1|0|G|1298
1NJO|1|0|A|1299
1NJO|1|0|A|1300
1NJO|1|0|U|1301
1NJO|1|0|C|1302

Current chains

Chain 0

23S ribosomal RNA

Nearby chains