HL_1NJO_039

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1NJO|1|0|A|1630, 1NJO|1|0|A|1632, 1NJO|1|0|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_039 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1783

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1NJO|1|0|C|1628
1NJO|1|0|G|1629
1NJO|1|0|A|1630
1NJO|1|0|C|1631
1NJO|1|0|A|1632
1NJO|1|0|C|1633
1NJO|1|0|A|1634
1NJO|1|0|G|1635

Current chains

Chain 0

23S ribosomal RNA

Nearby chains