HL_1NJO_045

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

1NJO|1|0|C|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_045 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.4699

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

1NJO|1|0|C|1797
1NJO|1|0|G|1798
1NJO|1|0|A|1799
1NJO|1|0|A|1800
1NJO|1|0|C|1801
1NJO|1|0|A|1802
1NJO|1|0|G|1803

Current chains

Chain 0

23S ribosomal RNA

Nearby chains