HL_1NJO_048

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

1NJO|1|0|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_048 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2804

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1NJO|1|0|G|1932
1NJO|1|0|G|1933
1NJO|1|0|U|1934
1NJO|1|0|A|1935
1NJO|1|0|A|1936
1NJO|1|0|G|1937
1NJO|1|0|U|1938
1NJO|1|0|U|1939
1NJO|1|0|C|1940

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 5

RNA ACC(Puromycin)