HL_1NJO_060

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_060 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.2479

The information below is about HL_4WF9_058

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

1NJO|1|0|C|2530
1NJO|1|0|U|2531
1NJO|1|0|G|2532
1NJO|1|0|U|2533
1NJO|1|0|U|2534
1NJO|1|0|C|2535
1NJO|1|0|G|2536

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 5

RNA ACC(Puromycin)